Trim, Translate and Align (Clustal)
5' Trim Sequence:
The 5' sequence after which the translation will begin. This should ideally be long enough to be unique, e.g. > 6 residues.
3' Trim Sequence:
The 3' sequence before which the translation will stop. This should ideally be long enough to be unique, e.g. > 6 residues.
Reverse Complement
Determines whether the translation is created from the reverse complement of the sequence.
Yes
No
Translation Length:
The length of the sequence translated between the 5' and 3' trim sequences. If left blank, the entire sequence will be translated.
Preferences:
The save button allows the present values of the form to be stored. The reset button restores the page defaults without changing the stored preferences.
Saved Preferences:
Remove any saved preferences without changing the values entered in the form.
Instructions
To use this page, paste a list of FASTA-formatted DNA sequences into the text box. Enter the desired flanking sequences for trimming in the boxes at the top, make changes to any additional parameters, and click "Submit". The results can be then edited and submitted to Clustal Omega.
Paste Your FASTA File Contents Here
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